GOLM METABOLOME DATABASE

- home
- search
- ms analysis
  - library search
  - prediction
- GoBioSpace
- blog
- thanks to
- publications
- imprint
- privacy policy
- contact
- help

The GMD web site use latest HTML5 features! This message indicates backward compatibility problems in GMD's mass spectra, chemical compound structure and metabolite profile visualizations. As your browser does not support the HTML5 <canvas> element, please consider to upgrade to a HTML5 ready web browser, including Microsoft Internet Explorer, Mozilla Firefox, Apple Safari, Google Chrome and Opera, to fully enjoy GMD's functionalities!

How would you rate the quality of this mass spectrum?

poor, not helpful

outstanding, most helpful.

This spectrum was 0 times rated; on average=0.0

Ornithine (4TMS)

This png spectrum visualization works for backward compatibility reasons only, as your browser does not support the HTML5 <canvas> element. To enjoy zoom-in functionality please upgrade to a HTML5 ready Browser!

Replica Mass Spectra of Ornithine (4TMS)

replica	lib entry date	detection	method	species
22	28 August 2012		MassBank GC 2010 Kusano
2	01 June 2001	MS-Quad	M[2]	Standard
24	28 August 2012		MassBank GC 2010 Ara
3	11 September 2005		M[FAME4090]	Standard
21	30 March 2011		Fiehn_GC_2010
4	11 September 2005		M[FAME4090]	Standard
5	01 June 2001	MS-TOF	M[EIGTMS]	Standard
6	11 September 2005		M[FAME4090]	Standard
7	22 January 2005	MS-QUAD	M[ROE]
20	03 November 2010		Schomburg_GC_2010
22 spectrum(a)
Page of 3 Results per page:

rotate: click+drag; translate: alt+click+drag; zoom: mousewheel; save: mol

Spectrum Details

analyte	Ornithine (4TMS)
analyte InChI	InChI=1S/C17H44N2O2Si4/c1-22(2,3)18-16(17(20)21-25(10,11)12)14-13-15-19(23(4,5)6)24(7,8)9/h16,18H,13-15H2,1-12H3/t16-/m0/s1
analyte mass	420.89
chromatogram	2236BN50
citation	Schauer N, Steinhauser D, Strelkov S, Schomburg D, Allison G, Moritz T, Lundgren K, Roessner-Tunali U, Forbes MG, Willmitzer L, Fernie AR, Kopka J (2005) FEBS Letters 579, 1332-1337
authors	Kopka J, Max Planck Institute of Molecular Plant Physiology, Department of Molecular Plant Physiology (Prof. Willmitzer L), Am Muehlenberg 1, D-14476 Golm, Germany
lib entry date	01 August 2002
metabolite role	METB-METB
retention time (sec)	1,578
retention index (VAR5 method, n-alkanes C10–C36)	1,810.45 (predicted, according to Strehmel, N. et.al)
base peak (m/z)	142
maximal intensity	999
mass-intensity-peaks cardinality	136 intensities
minimal m/z	41
maximal m/z	423
download JCAMP DX	SpectrumJcampDx.ashx?id=218af332-173c-4ed0-9c1d-6205e973a22e
download MSP	SpectrumMsp.ashx?id=218af332-173c-4ed0-9c1d-6205e973a22e

GC-Method

name	M[2]
citation	Roessner U, Wagner C, Kopka J, Trethewey RN, Willmitzer L (2000) Plant J 23, 131-142

attribute	text	details
deconvolution	AMDIS, National Institute of Standards and Technology, Gaithersburg, MD, USA	DIRECTION:Low to High; WIDTH: 20; SUBTRACTION: two; RESOLUTION: low; SENSITIVITY: low; SHAPE: low
derivatization	MEOX; TMS	Methoxyamination:60min37°C; Trimethylsilylation:>45min37°C
detector	MS-Quad	m/z = 35-600; scans:2/s; MD 800 Thermo-Finnigan, San Jose, CA, USA
extraction	methanol:water (4:1; v/v); 15min70°C
ion source	EI	70eV
metabolic inactivation	cut; liquid nitrogen; -80°C
partitioning	methanol fraction of a methanol:water:chloroform (approx. 2:2:1, v/v/v) partitioning
RI	ALKANE	C12, C15, C19, C22, C28, C32, C36
separation	GC	COLUMN:5%diphenyl-95%dimethylpolysiloxane (arylene), 30+10m, ID:0.25mm, DF:0.25microm, Rtx-5SilMS Integra-Guard, #NA (Restek, Bad Homburg, Germany); PROGRAM:iso1min70°C, ramp9°C/min, iso5min350°C; FLOW:Helium, 0.6ml/min; INJECTION:1microL, splitless, 230°C; TRANSFER:250°C; IONSOURCE:250°C

comments on this mass spectrum

Post a Comment

Name:
Website:
Email:
Comments:
		*

Top