GOLM METABOLOME DATABASE

functional group prediction of compounds by means of GC-EI-MS spectra using microsoft analysis service decision trees

All currently available trained decision trees and sub-structure predictions provided by the GMD interface. Table describes the functional group, optional use of an RI system, record date of the trained decision tree, number of MSTs with proportion of MSTs linked to metabolites with the functional group present for each tree. Average and standard deviation of the 50-fold CV error, namely the ratio false over correctly sorted MSTs in the trained DT, are listed. The table can be sorted by activating the appropriated column header. The full list of decision trees is available through the paging function (left bottom).


functional groupgc columndate createdtotal casesFG present ratioCV errorprecisionrecallF-measureMCC
Alpha AminoacidMDN352/3/2009 4:50:00 PM1,52710.22%5.10%83.62%62.18%0.710.69
Alpha Aminoacidnone2/3/2009 4:50:00 PM3,50918.81%11.11%75.19%61.06%0.670.61
HydroxyMDN352/3/2009 5:07:00 PM1,52264.78%13.57%87.20%92.60%0.900.70
Hydroxynone2/3/2009 5:07:00 PM3,50956.06%13.64%88.47%86.99%0.880.72
HydroxyVAR52/3/2009 5:07:00 PM2,25957.37%13.54%89.10%87.04%0.880.72
Carboxylic AcidMDN352/3/2009 5:23:00 PM1,51249.01%16.95%80.02%87.04%0.830.66
Carboxylic Acidnone2/3/2009 5:23:00 PM3,50948.76%18.63%76.87%88.37%0.820.64
Carboxylic AcidVAR52/3/2009 5:23:00 PM2,26451.10%18.32%79.44%86.52%0.830.64
AcetalMDN352/3/2009 5:27:00 PM1,5059.04%3.23%86.55%75.74%0.810.79
Acetalnone2/3/2009 5:27:00 PM3,5096.95%1.80%88.84%84.84%0.870.86
166 mining model(s) in total.
MINING MODEL NAME: 2009-02-03T165023_Fg_Alpha_Aminoacid_MDN35 MINING MODEL ID: a4b44e94-1f00-40ad-89a3-5062a322af0a DESCRIPTION: This mining model was created as an initial model from the GMD (data version February 2009) to classify mass spectra in regard to the presense of a Alpha Aminoacid group. The error rate is based on a 50-fold Cross Validation (CV) of all training spectra averaging all test accuracies together.
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Collapse All<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 19px;"></div><div class="NodeDistributionAbsent" style="width: 81px;"></div></div>All
Collapse Intensity Lg - 100 &gt;= 2.0635438919<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 53px;"></div><div class="NodeDistributionAbsent" style="width: 47px;"></div></div>Intensity Lg - 100 >= 2.0635438919
Collapse Intensity Lg - 218 &lt; 1.1120529413<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 23px;"></div><div class="NodeDistributionAbsent" style="width: 77px;"></div></div>Intensity Lg - 218 < 1.1120529413
Collapse Intensity Lg - 99 &lt; 1.5508419275<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 31px;"></div><div class="NodeDistributionAbsent" style="width: 69px;"></div></div>Intensity Lg - 99 < 1.5508419275
Intensity Lg - 189 >= 2.0685333729
Intensity Lg - 189 < 2.0685333729
Intensity Lg - 99 >= 1.5508419275
Collapse Intensity Lg - 218 &gt;= 1.1120529413 and &lt; 2.3706843138<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 67px;"></div><div class="NodeDistributionAbsent" style="width: 33px;"></div></div>Intensity Lg - 218 >= 1.1120529413 and < 2.3706843138
Collapse Intensity Lg - 103 &gt;= 2.0688993216<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 13px;"></div><div class="NodeDistributionAbsent" style="width: 87px;"></div></div>Intensity Lg - 103 >= 2.0688993216
Intensity Lg - 128 >= 1.9632024765
Intensity Lg - 128 < 1.9632024765
Intensity Lg - 103 < 2.0688993216
Collapse Intensity Lg - 218 &gt;= 2.3706843138<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 93px;"></div><div class="NodeDistributionAbsent" style="width: 7px;"></div></div>Intensity Lg - 218 >= 2.3706843138
Intensity Lg - 82 >= 0.8261749744
Intensity Lg - 82 < 0.8261749744
Collapse Intensity Lg - 100 &gt;= 0.6588597298 and &lt; 1.5953158379<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 10px;"></div><div class="NodeDistributionAbsent" style="width: 90px;"></div></div>Intensity Lg - 100 >= 0.6588597298 and < 1.5953158379
Collapse Intensity Lg - 89 &lt; -0.0004213095 or &gt;= 0.8568419218<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 2px;"></div><div class="NodeDistributionAbsent" style="width: 98px;"></div></div>Intensity Lg - 89 < -0.0004213095 or >= 0.8568419218
Collapse Intensity Lg - 127 &lt; 0.232889533<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 11px;"></div><div class="NodeDistributionAbsent" style="width: 89px;"></div></div>Intensity Lg - 127 < 0.232889533
Collapse Intensity Lg - 129 &lt; 1.6713603973<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 22px;"></div><div class="NodeDistributionAbsent" style="width: 78px;"></div></div>Intensity Lg - 129 < 1.6713603973
Intensity Lg - 191 >= 1.3113253911
Intensity Lg - 191 < 1.3113253911
Intensity Lg - 129 >= 1.6713603973
Intensity Lg - 127 >= 0.232889533
Collapse Intensity Lg - 89 &gt;= -0.0004213095 and &lt; 0.8568419218<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 32px;"></div><div class="NodeDistributionAbsent" style="width: 68px;"></div></div>Intensity Lg - 89 >= -0.0004213095 and < 0.8568419218
Collapse Intensity Lg - 97 &lt; 1.0250376761<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 54px;"></div><div class="NodeDistributionAbsent" style="width: 46px;"></div></div>Intensity Lg - 97 < 1.0250376761
Intensity Lg - 189 >= 0.6713334322
Intensity Lg - 189 < 0.6713334322
Intensity Lg - 97 >= 1.0250376761
Collapse Intensity Lg - 100 &gt;= 1.5953158379 and &lt; 2.0635438919<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 28px;"></div><div class="NodeDistributionAbsent" style="width: 72px;"></div></div>Intensity Lg - 100 >= 1.5953158379 and < 2.0635438919
Collapse Intensity Lg - 89 &lt; 1.7141051531<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 58px;"></div><div class="NodeDistributionAbsent" style="width: 42px;"></div></div>Intensity Lg - 89 < 1.7141051531
Collapse Intensity Lg - 99 &gt;= 0.8262628913<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 33px;"></div><div class="NodeDistributionAbsent" style="width: 67px;"></div></div>Intensity Lg - 99 >= 0.8262628913
Intensity Lg - 99 >= 1.9131314456
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Collapse Intensity Lg - 99 &lt; 0.8262628913<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 77px;"></div><div class="NodeDistributionAbsent" style="width: 23px;"></div></div>Intensity Lg - 99 < 0.8262628913
Intensity Lg - 86 >= 1.9082538843
Intensity Lg - 86 < 1.9082538843
Collapse Intensity Lg - 89 &gt;= 1.7141051531<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 1px;"></div><div class="NodeDistributionAbsent" style="width: 99px;"></div></div>Intensity Lg - 89 >= 1.7141051531
Intensity Lg - 129 >= 1.6713603973
Intensity Lg - 129 < 1.6713603973
Collapse Intensity Lg - 100 &lt; 0.6588597298<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 4px;"></div><div class="NodeDistributionAbsent" style="width: 96px;"></div></div>Intensity Lg - 100 < 0.6588597298
Collapse Intensity Lg - 133 &lt; 1.533487165<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 12px;"></div><div class="NodeDistributionAbsent" style="width: 88px;"></div></div>Intensity Lg - 133 < 1.533487165
Collapse Intensity Lg - 95 &lt; 0.8703225255<div style="width: 100px; border: 1px dotted red;"><div class="NodeDistributionPresent" style="width: 19px;"></div><div class="NodeDistributionAbsent" style="width: 81px;"></div></div>Intensity Lg - 95 < 0.8703225255
Intensity Lg - 189 >= 1.1370667458
Intensity Lg - 189 < 1.1370667458
Intensity Lg - 95 >= 0.8703225255
Intensity Lg - 133 >= 1.533487165
highlight tree nodes according to: NODE NAME: 000000000 NODE CAPTION: All CHILDREN CARDINALITY: 4 NODE DESCRIPTION: All NODE PROBABILITY: 100% MSOLAP NODE SCORE: 403.258 MARGINAL PROBABILITY: 100%
NODE SUPPORT: 4,012 spectra Group PresentGROUP PRESENT SUPPORT: 748 Group PresentGROUP PRESENT PROBABILITY: 19% Group AbsentGROUP ABSENT SUPPORT: 3,264 Group AbsentGROUP ABSENT PROBABILITY: 81%
TREE SIZE: 46 node(s) NODE DEPTH: 0
COMPLEXITY PENALTY: MAXIMUM INPUT ATTRIBUTES: 255 MAXIMUM OUTPUT ATTRIBUTES: 255 MINIMUM SUPPORT: 10 spectra SCORE METHOD: 4 SPLIT METHOD: 3
legend:
ratio of functional group present cases
ratio of functional group absent cases
ratio of training cases compared to the root node
Yellow highlighted node indicates selected node for details on the right hand side.
Star indicates node leading to the prediction Star indicates node leading to the prediction.
service last updated 31/08/2021 © 2008-2014 Golm Metabolome Database - All rights reserved
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